PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00043209001
Common NameGSBRNA2T00043209001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Nin-like
Protein Properties Length: 815aa    MW: 91052.3 Da    PI: 5.7615
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00043209001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.85.2e-29533583252
               RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                           k+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++
  GSBRNA2T00043209001 533 DKTITLDVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIQRWPSRKIKKV 583
                          689**********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.166520603IPR003035RWP-RK domain
PfamPF020421.8E-25535583IPR003035RWP-RK domain
SuperFamilySSF542772.36E-22707802No hitNo description
Gene3DG3DSA:3.10.20.2403.9E-21713794No hitNo description
SMARTSM006664.9E-26714797IPR000270PB1 domain
PROSITE profilePS5174528.812714797IPR000270PB1 domain
PfamPF005641.8E-18715796IPR000270PB1 domain
CDDcd064071.64E-43716796No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 815 aa     Download sequence    Send to blast
MEDSFLQTQN AVMDTEFMDG LLLDGCWLET TDGSEFLNLP PSTPFDPSSF MWSPPTQDTS  60
AICTSGVVSQ TYGQDCADEF QWNKRWWIGP GGGGGSSVTE RLVQAVEHIK DYTTERGSLI  120
QLWVPVNRGG KRVLTTKEQP FSHDPMCQRL ANYREISVNY HFSAEQDDSK ALAGLPGRVF  180
LGKLPEWTPD VRFFKSEEYP RVQHAQDCDV RGTLAIPVFE QGSKICLGVI EVVMTTEMVK  240
LKPELESICR ALQAVDLRST ELPVPPSLKG CDLSYKAALP EIRNLLRCAC ETHKLPLAQT  300
WVSCLQQNKS GCRHNDENYI HCVSTIDDAC YLGDPTVREF QEACSEHHLL KGQGVAGQAF  360
LTNGPCFSPD VSNYKKSEYP LSHHANMFGL HGAVAIRLRC IHTGDADFVL EFFLPKDCDN  420
MEEQRRMLNA LSTIMAHVPR SLRTVTDKEL EEESEVVERE EVVTPKIENT SELHHSNPQN  480
LGLVFDGGDK LPNDGFGLKR GYDYTRESNI NESNTFTSGG FNSMAEKKRT KADKTITLDV  540
LRQYFAGSLK DAAKSIGVCP TTLKRICRQH GIQRWPSRKI KKVGHSLQKI QRVIDSVEGV  600
SGPLPIGSFY ANFPNLASQE PSQQPKTSPP PPPLQLSKSP VSQYSHSSSS SQCCSSETQL  660
NSSATAHPSQ GDTFKKVSSE VDLQSSVLTL SSLENIPQGQ GTHLLSSSSQ DDDSLRIKVS  720
YGEENIRFRM KNSRRLSDLQ WEIGKRFSIE DMSRYDLKYL DEDNEWVLLT CDEDVEECVD  780
VCRTTPSHTI KLLLHASSHH FPERSSPTGY TLWQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00154DAPTransfer from AT1G20640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00043209001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892470.0AC189247.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB018K09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149543.10.0PREDICTED: protein NLP4
RefseqXP_009149544.10.0PREDICTED: protein NLP4
RefseqXP_009149545.10.0PREDICTED: protein NLP4
SwissprotQ9LE380.0NLP4_ARATH; Protein NLP4
TrEMBLA0A078GVK00.0A0A078GVK0_BRANA; BnaA06g14540D protein
STRINGBra025834.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34612663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20640.20.0Nin-like family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]